Let $ \pi: SU(n) \to PU(n) $ be the projection map.
Suppose that $ H_1 $ and $ H_2 $ are isomorphic subgroups of $PU(n)$. Must the subgroups $ \pi^{-1}[H_1] $ and $ \pi^{-1}[H_2] $ of $ SU(n) $ be isomorphic?
This is certainly true for $ n=2 $ since $ PU(2) \cong SO(3) $ and there is a one-to-one correspondence between the dihedral subgroups $ D_n $ of $ SO(3) $ and the binary dihedral subgroups $ BD_n $ of $ SU(2) $. Also the tetrahedral $ A_4 $, octahedral $ S_4 $ and icosahedral $ A_5 $ subgroups correspond to the binary tetrahedral $ 2.A_4 $, binary octahedral $ 2.S_4 $ and binary icosahedral $ 2.A_5 $ subgroups of $ SU(2) $ respectively. Even for cyclic groups in $ SO(3) $ there is a unique lift to a cyclic subgroup of $ SU(2) $ of twice the size.
Its not hard to extend the argument from finite $ H_i $ to all closed $ H_i $. The only infinite closed subgroups are $ SO(2) \cong U(1) $ in $ SO(3) $, which lifts uniquely to $ U(1) \cong SO(2) $ in $ SU(2) $, and then $ O(2) $ in $ SO(3) $ which lifts uniquely to a slightly weird subgroup of $ SU(2) $ which I call $ N $ in my answer https://math.stackexchange.com/a/4398724/724711 because it is the normalizer of the maximal torus of $ SU(2) $.
But does this hold in general? Already for $ PU(3) $ it is not quite as obvious to me that isomorphic subgroups of $ PU(3) $ must pull back to isomorphic subgroups of $ SU(3) $.
In general this just seems like a group extension problem $$ 1 \to \langle\zeta_n\rangle \to \pi^{-1}[H] \to H \to 1 $$ of $ H $ by a cyclic group of order $ n $, which should have many solutions, so perhaps pullbacks of isomorphic groups can be nonisomorphic?