What is an example of two irreducible (closed) subgroups $ H_1,H_2 $ of $ SU(n) $ which are isomorphic but not conjugate?
For $ SU(2) $ there are no examples like this since isomorphic (closed) subgroups of $ SU(2) $ are always conjugate.
If we drop the assumption of irreducibility then $ diag(\zeta_3,\zeta_3,\zeta_3) $ and $ diag(1,\zeta_3,\zeta_3^2) $ both generate cyclic $ 3 $ subgroups of $ SU(3) $ which are isomorphic but not conjugate.