Here Presburger arithemtic is given by a set of axioms over the signature with binary operation $+$ and two constants $0$ and $1$. Similarly in Presburgers original paper he gives the arithmetic in terms of an axiomatic system. With this decidability could be proven by quantifier eliminiation, reducing everything to equations or congruence relations, which for fixed numerals are provable iff they are true in $\mathbb N$.
Another approach I have seens shows that the structure $\mathbb N$ with $+$ and $0$ and $1$ is decidable, i.e. that the set $$ \mbox{Th}(\mathbb N) = \{\varphi \mid \mathbb \models \varphi \} $$ is decidable, where the formulas have signature $+$ with $0$ and $1$. This approach constructs finite automata, see for example these lecture notes. These automata are a particular simple computational model, and most basic questions and constructions are decidable, which gives decidability for the above sentences, as to every formula an automaton could be constructed.
But isn't the second approach weaker than the first? I mean the first one implies that $\mbox{Th}(\mathbb N)$ is decidable, but in the second approach there is still the question for a meaningful axiomatic system in which we could construct proofs? Surely, we can take $\mbox{Th}(\mathbb N)$ itself as a decidable axiom system, and then every sentence proofs itself, but this seem a little bit artificial.
So am I right? Or does I overlook something, and the second approach also gives provability in the axiom systems referred to in the first paragraph?