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I have Thunar 1.6 as my default file manager, can I install Nemo as my second file manager? I have doubts of installing Nemo and get conflicts between each other. If it is possible should I change some settings in Xubuntu to run it smoothly ? Thanks, Vladi

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You can have multiple file managers installed , and even run different ones simultaneously, in Ubuntu 16.04 (and 18.04, as well). Currently, I have Doiuble Commander, Nautilus and Dolphin installed on the machine from which I'm typing (I like the split view some offer). Hopefully, that should also work in Xubuntu.

Multiple file managers in Ubuntu