Here's how to get the same result from both:
byte[] mm3_le = Hashing.murmur3_128().hashString("abc", UTF_8).asBytes();
byte[] mm3_be = Bytes.toArray(Lists.reverse(Bytes.asList(mm3_le)));
assertEquals("79267961763742113019008347020647561319",
new BigInteger(mm3_be).toString());
The hash code's bytes need to be treated as little endian but BigInteger interprets bytes as big endian. You were presumably using new BigInteger(hex, 16) to create the BigInteger, but the output of HashCode.toString() is actually a series of pairs of hexadecimal digits representing the hash bytes in the same order they're returned by asBytes() (little endian). (You can also reverse those pairs of hexadecimal to get a hex number that does produce the same result when passed to new BigInteger(reversedHex, 16)).
I think the documentation of toString() is somewhat confusing because of the way it refers to "big endian"; it doesn't actually mean that the output of the method is the hexadecimal number representing the bytes interpreted as big endian.
We have an open issue for adding asBigInteger() to HashCode.