Let $\bar x_s, \sigma_s$ be the vector of first moments and the covariance matrix of an $N$-mode Gaussian state $\rho_s$. If $\rho_s$ is paired with an empty environment of similar dimension, the total state is described by the moments \begin{equation} \bar x = \begin{pmatrix} \bar x_s \\ 0_{\scriptstyle{N}} \end{pmatrix}, \quad \sigma = \begin{pmatrix} \sigma_s & 0 \\ 0 & \sigma_e \end{pmatrix} \end{equation} where $\sigma_e = \frac12 I_{2N}$. Now consider the action of a family of beam splitters $\{S_j\}$ coupling each system mode $j$ with the corresponding $j$-th environmental mode with transmittance $\sqrt{t_j}$ and reflectivity $r_j$. Since we are only interested in the system, we take the partial trace right after the transformation, in order to obtain $\bar x_s'$ and $\sigma_s'$.
My question is: what is the correct expression for the evolved subsystem? My main doubt arises from the way I should be writing the total transformation $S$. Each beam splitter mixing two modes can be individually written as a matrix $$S_j = \begin{pmatrix}\sqrt{t_j}I_2 & \sqrt{r_j}I_2 \\ -\sqrt{r_j}I_2 & \sqrt{t_j}I_2\end{pmatrix}$$ and I originally wrote $S=\bigoplus_j S_j$, but I think I'm making a mistake since that would correspond to the interleaved ordering of the quadratures $$(q_1^s, p_1^s, q_1^e, p_1^e,..., q_N^s, p_N^s, q_N^e, p_N^e)$$ instead of the ordering $$(q_1^s, p_1^s, ..., q_N^s, p_N^s, q_1^e, p_1^e,...,q_N^e, p_N^e)$$ implied by the original form of $\sigma$. I tried writing down the matrices explicitly for $N=2$ but the corrected version doesn't seem to admit a nice closed form for general $N$, making the computation of the partial trace somewhat harder.
Now consider the general case $\sqrt t_j\in \mathbb C$. Write $\sqrt t_j = |\sqrt t_j|e^{i\phi_j}$; then the total transformation should be equivalent to a phase shift $F = \bigoplus_{j=1}^N R(\phi_j)$ with $$R(\phi_j) = \begin{pmatrix}\cos\phi_j & \sin\phi_j \\ -\sin\phi_j & \cos\phi_j \end{pmatrix} $$ followed by a pure loss with real transmittances $|\sqrt t_j|$, yielding $$\sigma_s' = (DF)\sigma(DF)^\top + \frac12(I - D^2)$$ where now we define $D := \text{diag}(|\sqrt t_1|, |\sqrt t_1|,...,|\sqrt t_N|, |\sqrt t_N|)$.