The first thing that went through my mind after reading the title was: $i$ going from $1$ to $k$, with $j$ excluded. I imagine that it would be understood from the context that the intention was to cycle through both $i$ and $j$. Without context this might as well be the index set of all $k$'s that satisfy some lower bounds defined by a pair $(i,j)$ and some relation $(i\neq j)$ between them. At this point we don't know, so it is context-dependent.
In general there is no implicit set of rules.
With respect to your comment, this is understood from context, even if they are not 100% formal. While you argue that formally $i\leq k$ is not implied, this becomes more a game of definition and formality. One would generally (i.e. when being super-formal) not combine $\neq$ with $\leq / \geq$ because this breaks transitivity. This is only used to simplify the notation, so that one doesn't have to write the full statement $1≤i≤k,1≤j≤k,i≠j$, which is 100% the intended meaning.
I would write something like this in the context of a sum:
$$
\sum_{\substack{1 \leq i,j \leq k \\ i \neq j}}
$$
However be aware that the meaning is absolutely intended to convey $i \leq k$ and there is no doubt about that.
WRT. your question, the meaning is absolutely indended to convey $i \leq k$ and there is no doubt about that.
– Kolja Oct 18 '24 at 11:18